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Integrated Devices & Embedded Instruments

Seamless integration for a unified, automated workflow.

Designed for partners who need direct device interaction, Opentrons enables the Flex to communicate with your core instrument and manage all required upstream sample preparation before handoff. The result is an integrated workflow built around your technology, ready to run the way you need it to.


Built to integrate. Designed to scale.

Turn your instrument into a complete, automated, market-ready solution on the Flex

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Native device integration

We work with you to integrate your device directly onto the Opentrons Flex, enabling native communication, synchronized execution, and upstream sample preparation as part of a single automated workflow.

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Custom drivers and system control

Custom driver development supports your device’s unique communication, timing, and coordination requirements. Flexible APIs and Python-based tooling enable full robotic control, including integration with third-party systems like LIMS and schedulers.

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Hardware, deck, and labware compatibility

From deck-mounted devices to specialized integrated components, we support custom hardware configurations, motion coordination, and device-specific labware formats, so your instrument runs exactly as intended within automation.

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Proven platform, proven partners

With over 10,000+ systems deployed globally, Opentrons’ open platform has powered successful OEM integrations. From automation-ready versions of high-value instruments to AI-driven workflows, our partners use Flex to accelerate innovation and reduce integration risk.

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Dedicated integration support

Integration is a collaboration. Partners receive hands-on technical guidance, custom driver support, and access to open documentation to accelerate development timelines, often achieving full integration in 3–6 months.

Partner spotlight

Accelerating breakthroughs through successful OEM collaborations

  • BD
    BD Rhapsody HT Xpress

    Automated sample preparation for BD’s single-cell multiomics workflows

  • cephlalogo
    Cephla Automated Microscope

    Integrated onto Flex with custom mechanical mount and API control for on-deck imaging.

  • Portalbio
    Portal Bio Galaxy System

    Deck-mounted electroporation system seamlessly controlled by the Flex API.

Don’t just automate a single step. Partner with Opentrons to transform your proprietary hardware into a fully integrated automation solution—built to scale, ready for the market